Ninkovic, Jovica
- Koupourtidou C, Schwarz V, Aliee H, Frerich S, Fischer-Sternjak J, Bocchi R, Simon-Ebert T, Bai X, Sirko S, Kirchhoff F, Dichgans M, Götz M, Theis FJ, Ninkovic J. Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex. Nat Commun. 2024 Apr 3;15(1):2866. doi: 10.1038/s41467-024-46625-w. PMID: 38570482; PMCID: PMC10991294.
- Kueckelhaus J, Frerich S, Kada-Benotmane J, Koupourtidou C, Ninkovic J, Dichgans M, Beck J, Schnell O, Heiland DH. Inferring histology-associated gene expression gradients in spatial transcriptomic studies. Nat Commun. 2024 Aug 23;15(1):7280. doi: 10.1038/s41467-024-50904-x. PMID: 39179527; PMCID: PMC11343836.
- Sirko S, Schichor C, Della Vecchia P, Metzger F, Sonsalla G, Simon T, Bürkle M, Kalpazidou S, Ninkovic J, Masserdotti G, Sauniere JF, Iacobelli V, Iacobelli S, Delbridge C, Hauck SM, Tonn JC, Götz M (2023). Injury-specific factors in the cerebrospinal fluid regulate astrocyte plasticity in the human brain. Nat Med. 2023 Dec;29(12):3149-3161. doi: 10.1038/s41591-023-02644-6. Epub 2023 Dec 8. PMID: 38066208; PMCID: PMC10719094.
Giehrl-Schwab J, Giesert F, Rauser B, Lao CL, Hembach S, Lefort S, Ibarra IL, Koupourtidou C, Luecken MD, Truong DJ, Fischer-Sternjak J, Masserdotti G, Prakash N, Ninkovic J, Giehrl-Schwab J, Giesert F, Rauser B, Lao CL, Hembach S, Lefort S, Ibarra IL, Koupourtidou C, Luecken MD, Truong DJ, Fischer-Sternjak J, Masserdotti G, Prakash N, Ninkovic J, Hölter SM, Vogt Weisenhorn DM, Theis FJ, Götz M, Wurst W (2022). Parkinson's disease motor symptoms rescue by CRISPRa-reprogramming astrocytes into GABAergic neurons. EMBO Mol Med. 2022 Apr 4:e14797. doi: 10.15252/emmm.202114797. Epub ahead of print. PMID: 35373464.
Sanchez-Gonzalez R, Koupourtidou C, Lepko T, Zambusi A, Novoselc KT, Durovic T, Aschenbroich S, Schwarz V, Breunig CT, Straka H, Huttner HB, Irmler M, Beckers J, Wurst W, Zwergal A, Schauer T, Straub T, Czopka T, Trümbach D, Götz M, Stricker SH, Ninkovic J (2022). Innate Immune Pathways Promote Oligodendrocyte Progenitor Cell Recruitment to the Injury Site in Adult Zebrafish Brain. Cells. 2022 Feb 2;11(3):520. doi: 10.3390/cells11030520. PMID: 35159329; PMCID: PMC8834209.
Zambusi A, Novoselc KT, Hutten S, Kalpazidou S, Koupourtidou C, Schieweck R, Aschenbroich S, Silva L, Yazgili AS, van Bebber F, Schmid B, Möller G, Tritscher C, Stigloher C, Delbridge C, Sirko S, Günes ZI, Liebscher S, Schlegel J, Aliee H, Theis F, Meiners S, Kiebler M, Dormann D, Ninkovic J (2022). TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury. Nat Neurosci. 2022 Dec;25(12):1608-1625. doi: 10.1038/s41593-022-01199-y. Epub 2022 Nov 24. PMID: 36424432.
Gengatharan A, Malvaut S, Marymonchyk A, Ghareghani M, Snapyan M, Fischer-Sternjak J, Ninkovic J, Götz M, Saghatelyan A (2021). Adult neural stem cell activation in mice is regulated by the day/night cycle and intracellular calcium dynamics. Cell. 2021 Jan 13:S0092-8674(20)31748-7. doi: 10.1016/j.cell.2020.12.026. Epub ahead of print. PMID: 33482084.
Kjell J, Fischer-Sternjak J, Thompson AJ, Friess C, Sticco MJ, Salinas F, Cox J, Martinelli DC, Ninkovic J, Franze K, Schiller HB, Götz M (2020). Defining the Adult Neural Stem Cell Niche Proteome Identifies Key Regulators of Adult Neurogenesis. Cell Stem Cell. 2020 Feb 6;26(2):277-293.e8. doi: 10.1016/j.stem.2020.01.002.
Zambusi A, Pelin Burhan Ö, Di Giaimo R, Schmid B, Ninkovic J (2020). Granulins Regulate Aging Kinetics in the Adult Zebrafish Telencephalon. Cells. 2020 Feb 3;9(2). pii: E350. doi: 10.3390/cells9020350.
Durovic T, Ninkovic J (2019). Electroporation Method for In Vivo Delivery of Plasmid DNA in the Adult Zebrafish Telencephalon. J Vis Exp. 2019 Sep 13;(151). doi: 10.3791/60066.
Lepko T, Pusch M, Müller T, Schulte D, Ehses J, Kiebler M, Hasler J, Huttner HB, Vandenbroucke RE, Vandendriessche C, Modic M, Martin-Villalba A, Zhao S, LLorens-Bobadilla E, Schneider A, Fischer A, Breunig CT, Stricker SH, Götz M, Ninkovic J (2019). Choroid plexus-derived miR-204 regulates the number of quiescent neural stem cells in the adult brain. EMBO J. 2019 Jul 15:e100481. doi: 10.15252/embj.2018100481. [Epub ahead of print]
Bywalez WG, Ona-Jodar T, Lukas M, Ninkovic J, Egger V (2017). Dendritic Arborization Patterns of Small Juxtaglomerular Cell Subtypes within the Rodent Olfactory Bulb. Front Neuroanat. 2017 Jan 20;10:127. doi: 10.3389/fnana.2016.00127. eCollection 2016.
Falk S, Bugeon S, Ninkovic J, Pilz GA, Postiglione MP, Cremer H, Knoblich JA, Götz M (2017). Time-Specific Effects of Spindle Positioning on Embryonic Progenitor Pool Composition and Adult Neural Stem Cell Seeding. Neuron. 2017 Feb 22;93(4):777-791.e3. doi: 10.1016/j.neuron.2017.02.009.
Heimann G, Canhos LL, Frik J, Jäger G, Lepko T, Ninkovic J, Götz M, Sirko S (2017). Changes in the Proliferative Program Limit Astrocyte Homeostasis in the Aged Post-Traumatic Murine Cerebral Cortex. Cereb Cortex. 2017 May 4:1-16. doi: 10.1093/cercor/bhx112. [Epub ahead of print]
Barbosa J S, Di Giaimo R, Götz M, Ninkovic J (2016). Single-cell in vivo imaging of adult neural stem cells in the zebrafish telencephalon. Nature Protocols. 2016 August. 11(8):1360-70. DOI: 10.1038/nprot.2016.077. Epub 2016 Jun 30.
Barbosa JS, Ninkovic J (2016). Adult neural stem cell behavior underlying constitutive and restorative neurogenesis in zebrafish. Neurogenesis (Austin). 2016 May 2;3(1):e1148101. doi: 10.1080/23262133.2016.1148101. eCollection 2016.
García-Cáceres C, Quarta C, Varela L, Gao Y, Gruber T, Legutko B, Jastroch M, Johansson P, Ninkovic J, Yi CX, Le Thuc O, Szigeti-Buck K, Cai W, Meyer CW, Pfluger PT, Fernandez AM, Luquet S, Woods SC, Torres-Alemán I, Kahn CR, Götz M, Horvath TL, Tschöp M (2016). Astrocytic Insulin Signaling Couples Brain Glucose Uptake with Nutrient Availability. Cell. 2016 Aug 11;166(4):867-80. doi: 10.1016/j.cell.2016.07.028.
Barbosa JS, Sanchez-Gonzalez R, Di Giaimo R, Baumgart EV, Theis FJ, Götz M, Ninkovic J (2015). Neurodevelopment. Live imaging of adult neural stem cell behavior in the intact and injured zebrafish brain. Science. 2015 May 15;348(6236):789-93. doi: 10.1126/science.aaa2729.
Calzolari F, Michel J, Baumgart EV, Theis F, Götz M, Ninkovic J (2015). Fast clonal expansion and limited neural stem cell self-renewal in the adult subependymal zone. Nat Neurosci. 2015 Mar 2. doi: 10.1038/nn.3963. [Epub ahead of print]
Lahiri S, Sun N, Solis-Mezarino V, Fedisch A, Ninkovic J, Feuchtinger A, Götz M, Walch A, Imhof A (2015). In situ detection of histone variants and modifications in mouse brain using imaging mass spectrometry. Proteomics. 2015 Nov 23. doi: 10.1002/pmic.201500345. [Epub ahead of print]
Ninkovic J, Götz M (2014). A time and place for understanding neural stem cell specification. Dev Cell. 2014 Jul 28;30(2):114-5. doi: 10.1016/j.devcel.2014.06.023.
Ninkovic J, Götz M (2014). How to make neurons-thoughts on the molecular logic of neurogenesis in the central nervous system. Cell Tissue Res. 2014 Nov 23. [Epub ahead of print]
Bardehle S, Krüger M, Buggenthin F, Schwausch J, Ninkovic J, Clevers H, Snippert HJ, Theis FJ, Meyer-Luehmann M, Bechmann I, Dimou L, Götz M (2013). Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation. Nat Neurosci. 2013 Mar 31. doi: 10.1038/nn.3371. [Epub ahead of print]
Ninkovic J, Götz M (2013). Fate specification in the adult brain - lessons for eliciting neurogenesis from glial cells. Bioessays 35(3):242-52 (2013)
Ninkovic J, Steiner-Mezzadri A, Jawerka M, Akinci U, Masserdotti G, Petricca S, Fischer J, von Holst A, Beckers J, Lie CD, Petrik D, Miller E, Tang J, Wu J, Lefebvre V, Demmers J, Eisch A, Metzger D, Crabtree G, Irmler M, Poot R, Götz M (2013). The BAF Complex Interacts with Pax6 in Adult Neural Progenitors to Establish a Neurogenic Cross-Regulatory Transcriptional Network. Cell Stem Cell. 2013 Aug 6. pii: S1934-5909(13)00310-X. doi: 10.1016/j.stem.2013.07.002. [Epub ahead of print]
Pilz GA, Shitamukai A, Reillo I, Pacary E, Schwausch J, Stahl R, Ninkovic J, Snippert HJ, Clevers H, Godinho L, Guillemot F, Borrell V, Matsuzaki F, Götz M (2013). Amplification of progenitors in the mammalian telencephalon includes a new radial glial cell type. Nat Commun. 2013 Jul 10;4:2125. doi: 10.1038/ncomms3125
Walcher T, Xie Q, Sun J, Irmler M, Beckers J, Oztürk T, Niessing D, Stoykova A, Cvekl A, Ninkovic J, Götz M (2013). Functional dissection of the paired domain of Pax6 reveals molecular mechanisms of coordinating neurogenesis and proliferation. Development 140(5):1123-36 (2013)